VIRsiRNAid | siRNA Sequence | Virus_Name | Target Region | Cell Line | Test Object | Efficacy | PMID | Offtarget | Align With | ALIGN0 Result |
virsi1188 | agcgucuagccauggcguu | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | mRNA | 84 | 17129382 | Blast SL | refseqs |       |
virsi1191 | gacugcuagccgaguagcg | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | mRNA | 61 | 17129382 | Blast SL | refseqs |       |
virsi1189 | uugccaggaugaccggguc | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | mRNA | 57 | 17129382 | Blast SL | refseqs |       |
virsi1190 | cccgcucaaugccuggaga | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | mRNA | 47 | 17129382 | Blast SL | refseqs |       |
virsi2158 | cuacuucgaaaaacccagu | Human Coxsackievirus [CV] | 5'UTR | COS-7 | mRNA | 0 | 17222937 | Blast SL | refseqs |       |
virsi2331 | aguuguuagucuacguggac | Dengue Virus [DENV] | 5'UTR | Huh-7 | Plaque Count | High | 21795337 | Blast SL | refseqs |       | Pubmed:
21795337 Article:
Inhibition of dengue virus infections in cell cultures and in AG129 mice by an siRNA targeting a highly conserved sequence. Stein DA, Perry ST, Buck MD, Oehmen CS, Fischer MA, Poore E, Smith JL, Lancaster AM, Hirsch AJ, Slifka MK, Nelson JA, Shresta S, Fraceh K. J Virol. 2011 Jul 27. [Epub ahead of print] J Virol. 2011 21795337
Authors:
Journal:
Entrez:
virsi2025 | ccaacaguagaccugguag | Human Rhinovirus | 5'UTR | HeLa | Plaque Count | 7 | 14670593 | Blast SL | refseqs |       |
virsi2024 | cgguaaucuuguacgccag | Human Rhinovirus | 5'UTR | HeLa | Plaque Count | 6 | 14670593 | Blast SL | refseqs |       |
virsi2026 | gugcacacaauccagugug | Human Rhinovirus | 5'UTR | HeLa | Plaque Count | 5 | 14670593 | Blast SL | refseqs |       |
virsi2332 | auuagagagcagaucucug | Dengue Virus [DENV] | 5'UTR | Huh-7 | Plaque Count | 0 | 21795337 | Blast SL | refseqs |       | Pubmed:
21795337 Article:
Inhibition of dengue virus infections in cell cultures and in AG129 mice by an siRNA targeting a highly conserved sequence. Stein DA, Perry ST, Buck MD, Oehmen CS, Fischer MA, Poore E, Smith JL, Lancaster AM, Hirsch AJ, Slifka MK, Nelson JA, Shresta S, Fraceh K. J Virol. 2011 Jul 27. [Epub ahead of print] J Virol. 2011 21795337
Authors:
Journal:
Entrez:
virsi1801 | acagccuguggguugaucc | Human Coxsackievirus [CV] | 5'UTR | COS-7 | Protein | Low | 16164410 | Blast SL | refseqs |       |
virsi1802 | guaacacacaccgaucaac | Human Coxsackievirus [CV] | 5'UTR | COS-7 | Protein | Low | 16164410 | Blast SL | refseqs |       |
virsi1803 | ggagaaagcguucguuauc | Human Coxsackievirus [CV] | 5'UTR | COS-7 | Protein | Low | 16164410 | Blast SL | refseqs |       |
virsi1804 | uacagacauggugcgaaga | Human Coxsackievirus [CV] | 5'UTR | COS-7 | Protein | Low | 16164410 | Blast SL | refseqs |       |
virsi1805 | ccgacuacuuugggugucc | Human Coxsackievirus [CV] | 5'UTR | COS-7 | Protein | Low | 16164410 | Blast SL | refseqs |       |
virsi2156 | ggccuugugguacugccug | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | Low | 12740604 | Blast SL | refseqs |       | Pubmed:
12740604 Article:
Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.Authors:
Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.Journal:
EMBO Rep. 2003 Jun;4(6):602-8.Entrez:
12740604
virsi2154 | gcgucuagccauggcguua | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | High | 12740604 | Blast SL | refseqs |       | Pubmed:
12740604 Article:
Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.Authors:
Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.Journal:
EMBO Rep. 2003 Jun;4(6):602-8.Entrez:
12740604
virsi2155 | ggacgaccggguccuuucu | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | High | 12740604 | Blast SL | refseqs |       | Pubmed:
12740604 Article:
Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.Authors:
Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.Journal:
EMBO Rep. 2003 Jun;4(6):602-8.Entrez:
12740604
virsi2157 | ggucucguagaccgugcac | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | High | 12740604 | Blast SL | refseqs |       | Pubmed:
12740604 Article:
Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.Authors:
Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.Journal:
EMBO Rep. 2003 Jun;4(6):602-8.Entrez:
12740604
virsi1024 | cccgcucaaugcccg/cga | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | 100 | 19173711 | Blast SL | refseqs |       |
virsi1025 | auuugggcgugcccccgca | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | 100 | 19173711 | Blast SL | refseqs |       |
virsi1165 | gucucguagaccgugcauca | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | 91 | 16496015 | Blast SL | refseqs |       |
virsi1173 | ccgggaggucucguagaccgugcauca | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | 89 | 16496015 | Blast SL | refseqs |       |
virsi1184 | guacugccugauagggugc | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | 85 | 12477890 | Blast SL | refseqs |       | Browse "
virsi1184 " record
Length:
19 GC Content:
58 % Starting position:
286 Incubation Time (Hours):
48
virsi1174 | ggucucguagaccgugcau | Hepatitis C Virus [HCV] | 5'UTR | Huh-7 | Protein | 81 | 16496015 | Blast SL | refseqs |       |